Enter any credit memos to the invoices as you apply the payment and click on the Discounts and Credits button. Apply the credit on the open invoice and click Done. On this window as well, click on the “Deposit To” drop down list where you can record that you would want to batch the payment for later deposit. If you are on online payment click the “Get Online Payment” button to receive online payment information for your customer. Click on Save and Close to save your payment information.